rawconverter (Integrated Proteomics Applications)
86
Structured Review
Integrated Proteomics Applications
rawconverter
Rawconverter, supplied by Integrated Proteomics Applications, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rawconverter/rawconverter/bio_rxiv__64898__2026__02__01__703113-398-12-20
Average 86 stars, based on 1 article reviews
Rawconverter, supplied by Integrated Proteomics Applications, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rawconverter/rawconverter/bio_rxiv__64898__2026__02__01__703113-398-12-20
Average 86 stars, based on 1 article reviews
rawconverter - by Bioz Stars,
2026-09
86/100 stars
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Quantitation Assay:Article Title: Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome. Article Snippet: .. Raw files were again parsed into MS1 and MS2 spectra using Tandem Mass Spectroscopy:Article Title: Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome. Article Snippet: .. Raw files were again parsed into MS1 and MS2 spectra using Sequencing:Article Title: Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome. Article Snippet: .. Raw files were again parsed into MS1 and MS2 spectra using Software:Article Title: Isoform-selective activity-based profiling of ERK signaling †Electronic supplementary information (ESI) available: Experimental Methods and Supplementary Figures. See DOI: 10.1039/c8sc00043c Article Snippet: The eluted peptides were electrosprayed into an Orbitrap Q Exactive Plus mass spectrometer (Thermo Scientific), which was operated with a top 10 data-dependent acquisition method that consisted of one full MS1 scan (375 - 1,500 m/z) followed by 10 MS2 scans of the most abundant ions recorded in the MS1 scan. .. Data analysis was accomplished using the IP2 (Integrated Proteomics Applications) software package, in which Modification:Article Title: Isoform-selective activity-based profiling of ERK signaling †Electronic supplementary information (ESI) available: Experimental Methods and Supplementary Figures. See DOI: 10.1039/c8sc00043c Article Snippet: The eluted peptides were electrosprayed into an Orbitrap Q Exactive Plus mass spectrometer (Thermo Scientific), which was operated with a top 10 data-dependent acquisition method that consisted of one full MS1 scan (375 - 1,500 m/z) followed by 10 MS2 scans of the most abundant ions recorded in the MS1 scan. .. Data analysis was accomplished using the IP2 (Integrated Proteomics Applications) software package, in which Multiplex sample analysis:Article Title: Isoform-selective activity-based profiling of ERK signaling †Electronic supplementary information (ESI) available: Experimental Methods and Supplementary Figures. See DOI: 10.1039/c8sc00043c Article Snippet: The eluted peptides were electrosprayed into an Orbitrap Q Exactive Plus mass spectrometer (Thermo Scientific), which was operated with a top 10 data-dependent acquisition method that consisted of one full MS1 scan (375 - 1,500 m/z) followed by 10 MS2 scans of the most abundant ions recorded in the MS1 scan. .. Data analysis was accomplished using the IP2 (Integrated Proteomics Applications) software package, in which Article Title: Compositions and uses thereof Article Snippet: .. 30 DTASelect 2.0 using the —mass, —modstat, and —trypstat options with a 1% peptide FDR. mzIdent files corresponding to searches were generated in IP2-Integrated Proteomics Pipeline, mzXML spectra data was extracted from the raw file using Article Title: The Ligand Binding Landscape of Diacylglycerol Kinases Article Snippet: Data analysis was accomplished using the IP2 (Integrated Proteomics Applications) software package, in which RawConverter was used to generate searchable MS1 and MS2 data from the .raw file followed by using the ProLuCID algorithm to search the data against a modified human protein database (UniProt human protein database with rat DGKs, angiotensin I and vasoactive intestinal peptide standards; 40,660 proteins) with the following parameters: static carbamidomethyl modification of cysteine (+57.0142 Da), differential modifications of oxidized methionine (+15.9949 Da) and desthiobiotin-labeled lysine residues (+196.1212 Da), added masses of the SILAC “heavy”-labeled amino acids (+10.0083 Da for R, +8.0142 Da for K), and trypsin enzyme specificity with 2 missed cleavages. .. The resulting MS2 spectra matches were assembled into protein identifications and filtered using DTA Select 2.0 using the --mass, --modstat, and --trypstat options with a 1% peptide FDR. mzIdent files corresponding to searches were generated in IP2-Integrated Proteomics Pipeline, mzXML spectra data was extracted from the raw file using Generated:Article Title: Compositions and uses thereof Article Snippet: .. 30 DTASelect 2.0 using the —mass, —modstat, and —trypstat options with a 1% peptide FDR. mzIdent files corresponding to searches were generated in IP2-Integrated Proteomics Pipeline, mzXML spectra data was extracted from the raw file using Article Title: The Ligand Binding Landscape of Diacylglycerol Kinases Article Snippet: Data analysis was accomplished using the IP2 (Integrated Proteomics Applications) software package, in which RawConverter was used to generate searchable MS1 and MS2 data from the .raw file followed by using the ProLuCID algorithm to search the data against a modified human protein database (UniProt human protein database with rat DGKs, angiotensin I and vasoactive intestinal peptide standards; 40,660 proteins) with the following parameters: static carbamidomethyl modification of cysteine (+57.0142 Da), differential modifications of oxidized methionine (+15.9949 Da) and desthiobiotin-labeled lysine residues (+196.1212 Da), added masses of the SILAC “heavy”-labeled amino acids (+10.0083 Da for R, +8.0142 Da for K), and trypsin enzyme specificity with 2 missed cleavages. .. The resulting MS2 spectra matches were assembled into protein identifications and filtered using DTA Select 2.0 using the --mass, --modstat, and --trypstat options with a 1% peptide FDR. mzIdent files corresponding to searches were generated in IP2-Integrated Proteomics Pipeline, mzXML spectra data was extracted from the raw file using Targeted Proteomics:Article Title: Compositions and uses thereof Article Snippet: .. 30 DTASelect 2.0 using the —mass, —modstat, and —trypstat options with a 1% peptide FDR. mzIdent files corresponding to searches were generated in IP2-Integrated Proteomics Pipeline, mzXML spectra data was extracted from the raw file using Article Title: The Ligand Binding Landscape of Diacylglycerol Kinases Article Snippet: Data analysis was accomplished using the IP2 (Integrated Proteomics Applications) software package, in which RawConverter was used to generate searchable MS1 and MS2 data from the .raw file followed by using the ProLuCID algorithm to search the data against a modified human protein database (UniProt human protein database with rat DGKs, angiotensin I and vasoactive intestinal peptide standards; 40,660 proteins) with the following parameters: static carbamidomethyl modification of cysteine (+57.0142 Da), differential modifications of oxidized methionine (+15.9949 Da) and desthiobiotin-labeled lysine residues (+196.1212 Da), added masses of the SILAC “heavy”-labeled amino acids (+10.0083 Da for R, +8.0142 Da for K), and trypsin enzyme specificity with 2 missed cleavages. .. The resulting MS2 spectra matches were assembled into protein identifications and filtered using DTA Select 2.0 using the --mass, --modstat, and --trypstat options with a 1% peptide FDR. mzIdent files corresponding to searches were generated in IP2-Integrated Proteomics Pipeline, mzXML spectra data was extracted from the raw file using |